Software
PLAST: parallel local alignment search tool for database comparison
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Corresponding authors: Van Hoa Nguyen vhnguyen@irisa.fr - Dominique Lavenier lavenier@irisa.fr
1 Symbiose team-project, INRIA/IRISA, Campus de Beaulieu, 35042 Rennes Cedex, France
2 ENS Cachan Bretagne, Campus de Ker Lann, 35170 Bruz, France
BMC Bioinformatics 2009, 10:329 doi:10.1186/1471-2105-10-329
Published: 12 October 2009Additional files
Additional file 1:
Supplementary ROC curve. The ROC curves for the SCOP/ASTRAL40 data set of PLASTP and BLASTP with E-value of 10-3 and ROC curves for the Yeast data set of TPLASTN and TBLASTN with E-value of 1.
Format: PDF Size: 19KB Download file
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Additional file 2:
Misalignments of PLAST and BLAST. The sensitivity results of BLAST and PLAST for four large sets of data: GB1-NR versus PROT-SCOP-3K, GB1-NR versus PROT-SCOP-10K, SWPROT versus DNA-GB-3K and SWPROT versus DNA-GB-10K.
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Additional file 3:
Single-threaded performance. The comparison of performance of BLAST and PLAST families running with single-threaded and non-SSE.
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