Table 2

AUC values for training and testing datasets predicted by the single term

Evaluation terms

Training seta

Testing setb


Binding site propensity

0.637

0.577

Conservation score

0.593

0.564

Side chain energy score

0.555

0.569

Contact number

0.59

0.556

Planarity score

0.53

0.554

Fraction of turns & loops

0.489

0.587


a Antigen-antibody complexes from protein docking benchmark 2.0. b 17 recently released antigen-antibody complex structures in PDB. Unbound structures of both databsets were used for prediction and bound structures were used for identification of interface residues. The AUC values were calculated and averaged for all the proteins in two datasets, respectively.

Liang et al. BMC Bioinformatics 2009 10:302   doi:10.1186/1471-2105-10-302

Open Data