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PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees

Philippe Gouret1*, Julie D Thompson2 and Pierre Pontarotti1

Author Affiliations

1 UMR 6632, Evolutionary Biology and Modeling, University of Provence, 3 place Victor Hugo, 13331 Marseille, France

2 IGBMC, (CNRS/INSERM/ULP), Biology and Structural Genomics Department, BP 10142, 67404 Illkirch Cedex, France

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BMC Bioinformatics 2009, 10:298 doi:10.1186/1471-2105-10-298

Published: 19 September 2009

Additional files

Additional file 1:

PhyloPattern package, version 1.01. The complete PhyloPattern package with runtime, sources, samples and documentation.

Format: ZIP Size: 998KB Download file

Open Data

Additional file 2:

V_set domain full phylogenetic tree. The full domain tree corresponding to the top/left part of Figure 1.

Format: JPEG Size: 645KB Download file

Open Data

Additional file 3:

C2_set domain full phylogenetic tree. The full domain tree corresponding to the bottom/left part of Figure 1.

Format: JPEG Size: 651KB Download file

Open Data

Additional file 4:

TBC domain full phylogenetic tree. The full domain tree corresponding to the top/left part of Figure 3.

Format: JPEG Size: 636KB Download file

Open Data

Additional file 5:

UCH domain full phylogenetic tree. The full domain tree corresponding to the bottom/left part of Figure 3.

Format: JPEG Size: 579KB Download file

Open Data