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Open Access Highly Accessed Research article

A realistic assessment of methods for extracting gene/protein interactions from free text

Renata Kabiljo1*, Andrew B Clegg2 and Adrian J Shepherd1

Author Affiliations

1 School of Crystallography and Institute of Structural and Molecular Biology, Birkbeck College, University of London, Malet Street, London WC1E 7HX UK

2 Research Department of Structural and Molecular Biology and Institute of Structural and Molecular Biology, University College London, Gower St, London, WC1E 6BT UK

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BMC Bioinformatics 2009, 10:233  doi:10.1186/1471-2105-10-233

Published: 28 July 2009

Additional files

Additional file 1:

GPI Keywords. A text file containing the list of interaction keywords used by the Baseline(K) method.

Format: TXT Size: 4KB Download file

Open Data

Additional file 2:

Baseline K Perl Script. A Perl script that implements the Baseline(K) method. To be used in conjunction with the keyverbs.txt file. Zipped PL file

Format: ZIP Size: 1KB Download file

Open Data