Table 1

Bisulfite matching table after bitwise masking

Reference

A (00)

C (01)

G (10)

T (11)


Mask

11 (inactive)

01 (active)

11 (inactive)

11 (inactive)


Bisulfite Read

A(00)

00 (match)

01

10

11

C(01)

10

00 (match)

11

10

G(10) => A(00) if reference is C

10

01

00 (match)

01

T(11) => C(01) if reference is C

11

00 (match)

01

00 (match)


Xi and Li BMC Bioinformatics 2009 10:232   doi:10.1186/1471-2105-10-232

Open Data