Correspondence
FuGEFlow: data model and markup language for flow cytometry
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* Corresponding author: Ryan R Brinkman rbrinkman@bccrc.ca
- † Equal contributors
1 Department of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA
2 Division of Biomedical Informatics, University of Texas Southwestern Medical Center, Dallas, TX, USA
3 Fox Chase Cancer Center, Philadelphia, PA, USA
4 Terry Fox Laboratory, BC Cancer Agency, Vancouver, BC, Canada
5 Centre de recherché du Centre hospitalier de l'Universite de Montreal, Montreal, QC, Canada
6 Department of Pre-clinical Veterinary Science, Faculty of Veterinary Science, University of Liverpool, Liverpool, UK
BMC Bioinformatics 2009, 10:184 doi:10.1186/1471-2105-10-184
Published: 16 June 2009Additional files
Additional file 1:
Mapping between MIFlowCyt and FuGEFlow. Mapping between MIFlowCyt terms and FuGEFlow classes and attributes.
Format: XLS Size: 101KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 2:
Flow-OM UML model. The Flow-OM data model in UML.
MagicDraw Community edition is the recommended viewer : http://www.magicdraw.com/ webcite
Format: ZIP Size: 242KB Download file
Additional file 3:
Flow-ML markup language. The Flow-ML markup language described as XML schema.
Format: XSD Size: 66KB Download file
Additional file 4:
MIFlowCyt-compliant experiment in plain English. Example of MIFlowCyt-compliant data described in plain English.
Format: PDF Size: 396KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 5:
MIFlowCyt-compliant experiment in Flow-ML. Example of MIFlowCyt-compliant data described in Flow-ML.
Format: XML Size: 193KB Download file
Additional file 6:
MIFlowCyt-compliant gating in GatingML. Gating-ML file is referenced from the MIFlowCyt-compliant data example.
Format: XML Size: 12KB Download file
Additional file 7:
Flow-ML data in ISA-TAB. FuGEFlowtoISATAB.xsl stylesheet transformation file creates ISA-TAB HTML representation of Flow-ML data.
Format: XSL Size: 49KB Download file