Table 9

Distribution of conserved and not conserved CGIs over PBCs and gene association classes

Conserved CGIs


Gene association class

Constitutively unmethylated (%)*

Constitutively methylated (%)

Unmethylated in sperm (%)

Differentially methylated (%)


TSS

75 (23.22)

2 (2.38)

-

-

Promoter

43 (13.31)

24 (28.57)

8 (18.18)

7 (15.91)

3'UTR

1 (0.31)

2 (2.38)

1 (2.27)

3 (6.82)

CDS

12 (3.72)

23 (27.38)

7 (15.91)

7 (15.91)

Intron

6 (1.86)

3 (3.57)

-

2 (4.55)

Pseudogene

18 (5.57)

8 (9.52)

7 (15.91)

2 (4.55)

NA

2 (0.62)

1 (1.19)

2 (4.55)

3 (6.82)

Total # of conserved CGIs

157 (48.61)

63 (75.00)

25 (56.82)

24 (54.55)


Not conserved CGIs


Gene association class

Constitutively unmethylated (%)*

Constitutively methylated (%)

Unmethylated in sperm (%)

Differentially methylated (%)


TSS

63 (19.50)

1 (1.19)

3 (6.82)

2 (4.55)

Promoter

75 (23.22)

4 (4.76)

9 (20.45)

8 (18.18)

3'UTR

-

4 (4.76)

-

1 (2.27)

CDS

2 (0.62)

-

-

-

Intron

6 (1.86)

5 (5.95)

-

7 (15.91)

Pseudogene

15 (4.64)

3 (3.57)

7 (15.91)

2 (4.55)

NA

5 (1.55)

4 (4.76)

-

-

Total # of not conserved CGIs

166 (51.39)

21 (25.00)

19 (43.18)

20 (45.45)


Total # CGIs per PBC

323

84

44

44


*Absolute number and percentage of conserved and not conserved CGIs of each PBC in the gene-association classes.

Previti et al. BMC Bioinformatics 2009 10:116   doi:10.1186/1471-2105-10-116

Open Data