Table 1

Unique CpGs and CGIs defined by the HEP data

Tissue/Cell type

Abbreviation

Total # CpGs (%)*

# CGIs (%)**


CD4 T lymphocytes

CD4

31,219 (94.86)

515 (99.61)

CD8 T lymphocytes

CD8

29,979 (91.09)

503 (97.29)

Dermal fibroblasts

DF

29,776 (90.48)

504 (97.49)

Dermal keratinocytes

DK

29,739 (90.36)

508 (98.26)

Dermal melanocytes

DM

29,809 (90.58)

504 (97.49)

Fetal liver

FL

24,343 (73.97)

452 (87.43)

Fetal skeletal muscle

FSM

24,250 (73.69)

448 (86.65)

Heart muscle

HM

31,268 (95.01)

517 (100)

Liver

-

31,456 (95.58)

517 (100)

Placenta

-

29,900 (90.85)

505 (97.68)

Skeletal muscle

SM

31,518 (95.77)

513 (99.23)

Sperm

-

23,621 (71.77)

444 (85.88)


Supported by at least 2 tissues:

32,910

517


* Number and percentage of CpGs measured in at least one of the twelve tissues.

** Number and percentage of CGIs where at least 70% of the CpGs were covered by the HEP data, in at least two tissues.

Previti et al. BMC Bioinformatics 2009 10:116   doi:10.1186/1471-2105-10-116

Open Data