|
Test RHO enzymes used in this study. |
||||||
| Oxygenase |
Ferredoxin |
Reductase |
||||
|
|
||||||
| Test RHO enzyme system |
Gene |
Prosthetic group |
Prosthetic group |
Prosthetic group |
Structure |
Accession number |
|
|
||||||
| PAH dioxygenase (M. vanbaalenii PYR-1) [9] |
orf25 |
[2Fe-2S]/Fe2 |
unknown |
unknown |
unknown |
AY365117 |
| nidA |
[2Fe-2S]/Fe2 |
unknown |
unknown |
unknown |
AF249301 |
|
| nidA3 |
[2Fe-2S]/Fe2 |
unknown |
unknown |
unknown |
DQ028634 |
|
| PAH dioxygenase (Mycobacterium sp. 6PY1) [25] |
pdoA1 |
[2Fe-2S]/Fe2 |
unknown |
unknown |
unknown |
AJ494745 |
| PAH dioxygenase (Mycobacterium sp. S65) [24] |
pdoA |
[2Fe-2S]/Fe2 |
unknown |
unknown |
unknown |
AF546905 |
| PAH dioxygenase (Rhodococcus strain I24) [21] |
nidA |
[2Fe-2S]/Fe2 |
unknown |
unknown |
unknown |
AF121905 |
| PAH dioxygenase (Pseudomonas abietaniphila BKME-9) [60] |
ditA1 |
[2Fe-2S]/Fe2 |
[3Fe-4S] |
unknown |
unknown |
AF119621 |
| PAH dioxygenase (N. aromaticivorans F199) [37] |
xylX |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
GR-type |
AF079317 |
| bphA1a |
[2Fe-2S]/Fe2 |
|||||
| bphA1b |
[2Fe-2S]/Fe2 |
|||||
| bphA1c |
[2Fe-2S]/Fe2 |
|||||
| bphA1d |
[2Fe-2S]/Fe2 |
|||||
| bphA1e |
[2Fe-2S]/Fe2 |
|||||
| bphA1f |
[2Fe-2S]/Fe2 |
|||||
| PAH dioxygenase (Sphingomonas sp. P2) [36] |
ahdA1a |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
GR-type |
AB091693 |
| ahdA1b |
[2Fe-2S]/Fe2 |
|||||
| ahdA1c |
[2Fe-2S]/Fe2 |
|||||
| ahdA1d |
[2Fe-2S]/Fe2 |
|||||
| ahdA1e |
[2Fe-2S]/Fe2 |
|||||
| xylX |
[2Fe-2S]/Fe2 |
|||||
| PAH dioxygenase (Sphingomonas sp. CHY-1) [42] |
phnA1a |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
GR-type |
AJ633551 |
| phnA1b |
[2Fe-2S]/Fe2 |
|||||
| PAH dioxygenase (Cycloclasticus sp. A5) [43] |
phnA1 |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
FNRN-type |
AB102786 |
| Aniline dioxygenase (D. acidovorans 7N) [61] |
orf7NC |
[2Fe-2S]/Fe2 |
None |
FAD/[2Fe-2S] |
FNRC-type |
AB177545 |
| Phthalate dioxygenase (P. putida) [62] |
pht3 |
[2Fe-2S]/Fe2 |
None |
FMN/[2Fe-2S] |
FNRC-type |
D13229 |
| Vanillate O-demethylase oxygenase (Pseudomonas sp. HR199) [63] |
vanA |
[2Fe-2S]/Fe2 |
None |
FMN/[2Fe-2S] |
FNRC-type |
Y11521 |
| Anthranilate 1,2-dioxygenase (P. resinovorans CA10) [64] |
antA |
[2Fe-2S]/Fe2 |
None |
FAD/[2Fe-2S] |
FNRN-type |
AB047548 |
| Naphthalene dioxygenase (Ralstonia sp. U2) [38] |
nagAc |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD/[2Fe-2S] |
FNRN-type |
AF036940 |
| Salicylate 5-hydroxylase (Ralstonia sp. U2) [65] |
nagG |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD/[2Fe-2S] |
FNRN-type |
AF036940 |
| Salicylate 5-hydroxylase (P. aeruginosa JB2) [66] |
hybB |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD/[2Fe-2S] |
FNRN-type |
AF087482 |
| Naphthalene dioxygenase (P. aeruginosa Pak1) [67] |
pahA3 |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD/[2Fe-2S] |
FNRN-type |
D84146 |
| Carbazole 1,9a-dioxygenase (Pseudomonas sp. XLDN4-9) |
carAa |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD/[2Fe-2S] |
FNRN-type |
DQ060076 |
| PAH dioxygenase (R. erythropolis TA421) [68] |
bphA1 |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
GR-type |
D88021 |
| Chllorobenzene dioxygenase (Pseudomonas sp. P51) [17] |
tcbAa |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
GR-type |
U15298 |
| Cumene dioxygenase (P. fluorescens IP01) [69] |
cumA1 |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
GR-type |
D37828 |
| p-Cumate dioxygenase (R. palustris No.7) [70] |
psbAc |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
GR-type |
AB022919 |
| p-Cumate dioxygenase (P. putida F1) [71] |
cmtAb |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
GR-type |
U24215 |
| Anthranilate 1,2-dioxygenase (B. cepacoa DBO1) [72] |
andAc |
[2Fe-2S]/Fe2 |
[2Fe-2S] |
FAD |
GR-type |
AY223539 |
Kweon et al. BMC Biochemistry 2008 9:11 doi:10.1186/1471-2091-9-11 |
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