|
Overview of the combination methods (242 Residues). The residue RMSD values are given for all of the 25 combinations consisting of AMBER (A), PARSE (P), MCCE (M), UHBD (U) and PROPKA (P). Figures marked in bold indicate an improvement while the asterisk indicates the best score. |
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| A + P |
A +M |
A + U |
A + PR |
P + M |
|
|
|
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| ASP |
1.556 |
1.245 |
1.174 |
0.837 |
1.161 |
| GLU |
1.301 |
1.012 |
0.816 |
0.676 |
1.026 |
| HIS |
1.331 |
0.631 |
0.827 |
1.000 |
0.727 |
| LYS |
1.281 |
0.763 |
0.742 |
0.646 |
0.793 |
| TYR |
1.899 |
1.512 |
1.238 |
1.028 |
1.502 |
|
|
|||||
| P + U |
P + PR |
M + U |
M + PR |
U + PR |
|
|
|
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| ASP |
1.074 |
0.786 |
0.910 |
0.818 |
0.596 |
| GLU |
0.834 |
0.690 |
0.660 |
0.766 |
0.393 |
| HIS |
0.812 |
0.987 |
0.566 |
1.289 |
0.955 |
| LYS |
0.742 |
0.647 |
0.713 |
0.755 |
0.366 |
| TYR |
1.212 |
1.016 |
0.974 |
0.956 |
0.466 |
|
|
|||||
| A + P + M |
A + P + U |
A + P + PR |
A + M + U |
A + M + PR |
|
|
|
|||||
| ASP |
1.262 |
1.242 |
1.000 |
1.038 |
0.837 |
| GLU |
1.064 |
0.973 |
0.844 |
0.761 |
0.714 |
| HIS |
0.792 |
0.954 |
0.942 |
0.520 |
0.839 |
| LYS |
0.868 |
0.913 |
0.846 |
0.615 |
0.590 |
| TYR |
1.607 |
1.446 |
1.300 |
1.195 |
1.097 |
|
|
|||||
| A + U + PR |
P + M + U |
P + M + PR |
M + U + PR |
A + P + M + U |
|
|
|
|||||
| ASP |
0.773 |
0.972 |
0.795 |
0.681 |
1.101 |
| GLU |
0.539 |
0.770 |
0.720 |
0.529 |
0.870 |
| HIS |
0.771 |
0.523 |
0.840 |
0.897 |
0.646 |
| LYS |
0.518 |
0.634 |
0.610 |
0.597 |
0.718 |
| TYR |
0.869 |
1.188 |
1.098 |
0.782 |
1.345 |
|
|
|||||
| A + P + M + PR |
A + P + U + PR |
A + M + U + PR |
P + M + U + PR |
A + P + M + U + PR |
|
|
|
|||||
| ASP |
0.929 |
0.905 |
0.779 |
0.738 |
0.866 |
| GLU |
0.798 |
0.706 |
0.588 |
0.592 |
0.690 |
| HIS |
0.754 |
0.771 |
0.690 |
0.668 |
0.650 |
| LYS |
0.683 |
0.689 |
0.525 |
0.540 |
0.605 |
| TYR |
1.256 |
1.112 |
0.959 |
0.959 |
1.115 |
Davies et al. BMC Biochemistry 2006 7:18 doi:10.1186/1471-2091-7-18 |
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