Table 3
Ratio (C3/C5)
 Gene ID
Signal Transduction
up
8.82
 ras-related small GTP binding protein Rab5 (rab5). [Acc# U18420]
down
0.29
 MAP kinase-activating death domain protein (MADD). [Acc# U77352]
0.27
 MAP kinase kinase kinase (MTK1). [Acc# AF002715]
0.19
 p38 gamma MAP kinase. [Acc# U66243]
0.18
 ERK3 protein kinase. [Acc# L77964]
0.14
 ERK1 mRNA for protein serine/threonine kinase. [Acc# X60188]
0.14
 mRNA for TRAF5. [Acc# AB000509]
Thymosin
up
5.16
 Thymosin beta-10. [Acc# S54005]
5.09
 Prothymosin alpha mRNA (ProT-alpha). [Acc# M26708]
4.38
 Thymosin beta-10. [Acc# M20259]
4.15
 m-RNA for NB Thymosin beta. [Acc# D82345]
4.1
 Parathymosin. [Acc# M24398]
3.54
 Thymosin beta-4. [Acc# M17733]
2.73
 Prothymosin alpha. [Acc# M14630]
Cell Cycle
up
9.62
 Cyclin protein gene. [Acc# M15796]
8.88
 14-3-3 epsilon. [Acc# U54778]
8.04
 mRNA for proliferation-associated gene (pag). [Acc# X67951]
7.8
 poly(ADP-ribose) polymerase. [Acc# M18112]
7.46
 p18 protein. [Acc# J04991]
6.46
 hCDC37 homolog, [Acc# U43077]
5.12
 hCDC10, CDC10 homolog. [Acc# S72008]
2.39
 hCDC2, [Acc# X05360]
down
0.24
 mRNA for putative serine/threonine protein kinase. [Acc# Y10032]
0.22
 Cam Kinase I. [Acc# L41816]
0.2
 Checkpoint suppressor 1 [Acc# U68723]
0.16
 PLSTIRE for serine/threonine protein kinase. [Acc# X66365]
0.15
 PCTAIRE-2 for serine/threonine protein kinase. [Acc# X66360]
DNA Repair/Replication
up
9.62
 PCNA [Acc# M15796]
7.8
 poly(ADP-ribose) polymerase. [Acc# M18112]
3.85
 Lupus p70 (Ku) autoantigen protein. [Acc# J04611]
2.56
 Excision repair protein (ERCC1). [Acc# M13194]
3.1
 DNA-PKcs [Acc# U34994]
down
0.25
 Rad51C (RAD51C). [Acc# AF029669]
0.23
 DNA repair protein XRCC9 (XRCC9). [Acc# U70310]
0.21
 DNA mismatch repair protein homolog (hMLH1). [Acc# U07343]
0.19
 Topoisomerase I. [Acc# J03250]
0.18
 RAD51D. [Acc# AF034956]
0.13
 DNA replication licensing factor (huMCM2). [Acc# D83987]
Transcription
Pol I
up
3.19
 Transcription factor SL1. [Acc# L39059]
Pol II
up
7.17
 100 kDa coactivator. [Acc# U22055]
6.42
 RNA polymerase II elongation factor-like protein. [Acc# Z47087]
3.34
 TFIID subunit TAFII55 (TAFII55). [Acc# U18062]
3.1
 mRNA for TBP associated factor, TAFII68. [Acc# X98893]
down
0.3
 TFIIB related factor hBRF (HBRF). [Acc# U75276]
0.29
 mRNA for transcriptional activator hSNF2b. [Acc# D26156]
0.27
 mRNA for RNA polymerase II 140 kDa subunit. [Acc# X63563]
0.25
 RNA polymerase II. [Acc# L37127]
0.22
 p300 protein. [Acc# U01877]
0.16
 Rac3 (RAC3). [Acc# AF008591]
0.14
 RNA polymerase II elongation factor SIII. [Acc# L34587]
Pol III
down
0.13
 TFIIIC Box B-binding subunit. [Acc# U02619]
0.12
 Transcription factor TFIIIB (hTFIIIB90). [Acc# U28838]
Chromatin Remodeling
up
4.93
 NAP (nucleosome assembly protein). [Acc# M86667]
4.83
 RNA polymerase transcriptional mediator (h-MED6). [Acc# U78082]
4.39
 sin3 associated polypeptide p18 (SAP18). [Acc# U96915]
3.81
 mRNA for nucleosome assembly protein. [Acc# D50370]
down
0.21
 SWI/SNF complex 170 KDa subunit (BAF170). [Acc# U66616]
0.21
 Chromatin assembly factor-I p150 subunit. [Acc# U20979]
0.19
 SWI/SNF complex 60 KDa subunit (BAF60c). [Acc# U66619]
DNA Binding
up
10.17
 mRNA for DNA binding protein TAXREB67. [Acc# D90209]
5.76
 Pur (pur-alpha). [Acc# M96684]
5.25
 Nuclear factor NF45. [Acc# U10323]
5.28
 mRNA for transcription factor AREB6. [Acc# D15050]
7.17
 Insulin-like growth factor binding protein 2 (IGFBP2). [Acc# M35410]
6.33
 Non-histone chromosomal protein HMG-17. [Acc# M12623]
down
0.27
 Kruppel related zinc finger protein (HTF10). [Acc# L11672]
0.26
 Transcription factor ETR101. [Acc# M62831]
0.21
 Helix-loop-helix protein (Id-2). [Acc# M97796]
0.2
 Transcription factor IL-4 Stat. [Acc# U16031]
0.2
 Activating transcription factor 3 (ATF3). [Acc# L19871]
0.16
 ATF family member ATF6 (ATF6). [Acc# AF005887]
0.16
 Paired box gene (PAX6) homologue. [Acc# M93650]
0.17
 MADS/MEF2-family transcription factor (MEF2C). [Acc# L08895]

de la Fuente et al. BMC Biochemistry 2002 3:14   doi:10.1186/1471-2091-3-14