Table 1

The set of 16 representative proteins used for establishing a standard numbering scheme
Protein Organism PDB-identifier
pyruvate decarboxylase S. cerevisiae 2VK8
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloheaxdiene-1-carboxylate synthase E. coli 2JLC
pyruvate decarboxylase Z. mobilis 1ZPD
branched-chain keto acid decarboxylase L. lactis 2VBF
benzoylformate decarboxylase P. putida 1BFD
carboxyethylarginine synthase S. clavuligerus 2IHT
cyclohexene-1,2-dione hydrolase Azoarcus sp. 2PGN
oxalyl-CoA decarboxylase O. formigenes 2C31
pyruvate oxidase A. viridans 1V5F
pyruvate dehydrogenase E. coli 3EYA
indolepyruvate decarboxylase E. cloacae 1OVM
acetohydroxyacid synthase S. cerevisiae 1JSC
acetohydroxyacid synthase A. thaliana 1YBH
acetohydroxyacid synthase K. pneumoniae 1OZF
benzaldehyde lyase P. fluorescens 2AG0
glyoxylate carboligase E. coli 2PAN

Of each PDB entry, chain A was used for alignment. It was verified that for all proteins chain A corresponds to the catalytic subunit.

Vogel et al.

Vogel et al. BMC Biochemistry 2012 13:24   doi:10.1186/1471-2091-13-24

Open Data