Table 2 |
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|
Parameter estimates for the tree |
||||
|
Model |
p |
l |
Parameter estimates |
Positively-selected sites |
|
|
||||
|
M0: one-ratio |
1 |
-5974.07 |
ω = 0.0621 |
None |
|
Branch-site model: |
||||
|
Model A |
3 |
-5925.68 |
p0 = 0.503, p1 = 0.102 |
Site for foreground lineage: |
|
(p2 + p3 ) = 0.393 |
100P 102F 115L 131S 137Y 138C 158Y 223S 279W 339E 349L 368P |
|||
|
ω2 = 14.2 |
379G 388P 393F 455N |
|||
|
(at P > 0.9) |
||||
|
|
||||
|
Note: p is the number of free parameters for the ω ratios. Parameters indicating positive selection are presented in boldtype. Sites potentially under positive selection were identified using laccase from P. cinnabarinus (AAF13052) according to Bayes Empirical Bayes analysis of Model A. |
||||
|
Levasseur et al. BMC Biochemistry 2010 11:32 doi:10.1186/1471-2091-11-32 |
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